Scientific Computing Laboratory
Publications
2020
Refereed Journal Articles
A. Buetti-Dinh, M. Herold, S. Christel, M.E. Hajjami, S. Bellenberg, O. Ilie, P. Wilmes, A. Poetsch, W. Sand, M. Vera, I.V. Pivkin, M. Dopson
Systems biology of acidophile biofilms for efficient metal extraction
Scientific Data, 2020
doi.org/10.1038/s41597-020-0519-2
S. Bellenberg , A. Buetti-Dinh, V. Galli, O. Ilie, M. Herold, S. Christel, M. Boretska, I.V. Pivkin, P. Wilmes, W. Sand, M. Vera, M. Dopson
Automated microscopic analysis of metal sulfide colonization by acidophilic microorganisms
Applied and Environmental Microbiology, 6-86, 2020
doi.org/10.1128/AEM.02702-19
A. Buetti-Dinh, M. Herold, S. Christel , M.E.Hajjami, F. Delogu, O. Ilie, S. Bellenberg, P. Wilmes, A. Poetsch, W. Sand, M. Vera, I.V. Pivkin, R. Friedman, M. Dopson
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations
BMC Bioinformatics, 1-21, 2020
doi.org/10.1186/s12859-019-3337-9
2019
Refereed Journal Articles
A. Buetti-Dinh, V. Galli, S. Bellenberg, O. Ilie, M. Herold, S. Christel, M. Boretska, I.V. Pivkin, P. Wilmes, W. Sand, M. Vera, M. Dopson
Deep neural networks outperform human expert's capacity in characterizing bioleaching bacterial biofilm composition
Biotechnology Reports, 2019
doi.org/10.1016/j.btre.2019.e00321